NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099822_1002133

Scaffold Ga0099822_1002133


Overview

Basic Information
Taxon OID3300006943 Open in IMG/M
Scaffold IDGa0099822_1002133 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California USA - Cow pea white BW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24287
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052412Metagenome142Y
F064435Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0099822_100213318F052412N/AMRRTHDGQGIVLLQLAAIGRGVHSKVIACVPGSERGGLERFATDKESVGQDYERDRLVGLDHERDSFVGAQ*
Ga0099822_100213332F052412N/AMRQTHDGQGIVLFSLAAIGRGVHSMVIACVPGSERGGLGHFATDEESVGQDYERDRLVGLDHERVSIMGAQ*
Ga0099822_10021338F064435N/AVIMAPPRRTYQSSQGNVPDIARAIEELVAVMTQQSIAMMQQHGA*

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