NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099822_1028376

Scaffold Ga0099822_1028376


Overview

Basic Information
Taxon OID3300006943 Open in IMG/M
Scaffold IDGa0099822_1028376 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California USA - Cow pea white BW
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4488
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameCalifornia, USA
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046862Metagenome150Y
F046863Metagenome150Y
F055472Metagenome138Y
F098771Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0099822_10283762F046862AGGVDSEDVTGRRRELHGQVRSGDNSAKGVEGRTTQEDIVGCWGVDDKESDWNGFGLGSFAKHGVEVDVAAGGYLFARKAIDWFVIRDHNSVWELEFLVGGPVEDVNGVALVDEDFLNGVVFNFNSDDHRVILLMVNAMKVVICEDDGRHTTSVVGMGDMIDGLDMVEVFLSGRRGGSSTSEATRDGVDSAT*
Ga0099822_10283763F055472AGGAMIISTDEAAKVTSTDQFFYLILECFAVFCGVAMVAVVAAVFGHISIRRCGCLAWWRDEVSL*
Ga0099822_10283765F046863AGGMGDVYFEVFIGVGFAGVAVQREGFPLGRKGGVGDKVGEGVTTSGLVGREQMRWDGMVDHSREGGGKVMRRDVGCWKVMWVVGCYMCSM*
Ga0099822_10283766F098771N/AVGLETNTFSTRFSPKMVSTPSRAGVNKQADADPSGPAGITPDLAAILDGQAKMQQELVDLKKRCVDEMEALWQENSRLRRKIEADPTLKGKAKEAFEAARSPTFQPTKEESEYNPTPHTFTTT*
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