Scaffold Ga0099823_1045464

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099823_1045464

Scaffold Ga0099823_1045464

Overview

Basic Information
Taxon OID	3300006944 Open in IMG/M
Scaffold ID	Ga0099823_1045464 Open in IMG/M
Source Dataset Name	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2925
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location Name	California, USA
Coordinates	Lat. (^o)	34.0722	Long. (^o)	-118.4441	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046862	Metagenome	150	Y
F055472	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099823_10454644	F055472	GGAGG	MVRSRGVAGSRAMIISANEATKVTGTNQFFYLILECFAVFCSVAMVAVVATIFGHISIKRCGCLAWWRDEVSL*
Ga0099823_10454645	F046862	AGGTGG	VVGLLNWELWAQASHVAFACQVLVTMDGEDVTGRGRELHGQVGGGDNSAKGVEGRTAQEDIKEADWNGFGLGSLTKHGVEVDVAAGGCLFARKAIDWFVIRDHSSVRELEFLVGGPVEDVNGAALVDKDFLNGVVFDFNSDDLGVILLMVEAMKVVICEDDGRHTTSVLGMSDMIDGLDMAKAFLSVRRGGSSTSEATRDGVNGAT*

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