NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099826_10036327

Scaffold Ga0099826_10036327


Overview

Basic Information
Taxon OID3300006948 Open in IMG/M
Scaffold IDGa0099826_10036327 Open in IMG/M
Source Dataset NameRoot nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3488
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0722Long. (o)-118.4441Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044018Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0099826_100363272F044018AGGAGMFTAISRNTQTAVCMMLSAVIVSVSLSLGAFAAERAAHGGYSVTITQLQ*
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Biomedical Sciences Research Center "Alexander Fleming"
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