Scaffold Ga0075524_10000213

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075524_10000213

Scaffold Ga0075524_10000213

Overview

Basic Information
Taxon OID	3300006950 Open in IMG/M
Scaffold ID	Ga0075524_10000213 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13376
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035352	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075524_100002139	F035352	AGTAG	VPNYSKKPVLTDSDEEYTMLIEVCEEFEKQKIDKVSREKYGNPAEIVIRNHLLRRNLNLSMIPNVIIQGSKIKNDLLLLKSGVVPNQDSYSSDQVKMVIEVKNNAVGGKTLEKGKREDTNKLLHFKFNELEATTNVKNFAVVVLSETLLPPKGPYKWRFKEDAIGKQNCKVFTLVARQLYPPGGLYVNYNIMEMLQKGQMKKTEEFQQLINYLKCL*

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