NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101646_1008771

Scaffold Ga0101646_1008771


Overview

Basic Information
Taxon OID3300007069 Open in IMG/M
Scaffold IDGa0101646_1008771 Open in IMG/M
Source Dataset NameMarine sponge Cinachyra sp. microbiome, Papua New Guinea CO2seep, Dobu 'bubble', cg4ads
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1038
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Cinachyra Sp. (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameDobu 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.73665Long. (o)150.867667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015565Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0101646_10087711F015565N/ACAKTIVKESRKFELARLKKKKEKHFGRLVTFWFGTFAMLFSSTGCVFRHEHTRR*
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