NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102532_1107664

Scaffold Ga0102532_1107664


Overview

Basic Information
Taxon OID3300007094 Open in IMG/M
Scaffold IDGa0102532_1107664 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1769
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Singapore - A Non-Axenic Oscillatoriales Culture (M13A)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.3991438Long. (o)103.77518Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029089Metagenome / Metatranscriptome189N
F035287Metagenome / Metatranscriptome172N
F040000Metagenome162N
F050316Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0102532_11076643F035287N/AMRPPPPKKKKGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNNLEHLIPVKDPYL*
Ga0102532_11076644F040000N/AMTPDYTVDKEWANLNSMIKVREEQLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFR*
Ga0102532_11076645F050316N/AVADAYGMNQELVTIPKSDISKADIADIAANLIHRIEEGEVNPIAAHVRLKAVVKALEQVLKATEQTVWDEAEKNGKK*
Ga0102532_11076647F029089N/ALSDLTDKLGLVPSYDDLTVATLKADFLKLVQKLPVDQQERYMKDIDQMTPARFEKGIKFIQDQLSKK*
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