Scaffold Ga0101666_1000794

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101666_1000794

Scaffold Ga0101666_1000794

Overview

Basic Information
Taxon OID	3300007113 Open in IMG/M
Scaffold ID	Ga0101666_1000794 Open in IMG/M
Source Dataset Name	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	3945
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Upa-Upasina 'bubble' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.8241	Long. (^o)	150.825833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002125	Metagenome / Metatranscriptome	591	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101666_10007946	F002125	N/A	RKKLPQIYLLNFQTYLFHTAVIALVGEPSLTSVDLFVSKDTANLTFLRKLPQTIIEVQKVNK*

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