Basic Information | |
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Taxon OID | 3300007113 Open in IMG/M |
Scaffold ID | Ga0101666_1001131 Open in IMG/M |
Source Dataset Name | Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of New South Wales |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 3484 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps |
Source Dataset Sampling Location | ||||||||
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Location Name | Upa-Upasina 'bubble' site, Papua New Guinea | |||||||
Coordinates | Lat. (o) | -9.8241 | Long. (o) | 150.825833 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042905 | Metagenome / Metatranscriptome | 157 | N |
Protein ID | Family | RBS | Sequence |
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Ga0101666_10011312 | F042905 | GAGG | MIRLNDTYAGYYTYDKDHSPSNVDFLRTEINLDILHGCDQMCPGCFIPRKNLTNADHLKDLYELLVNGSYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWVIKSKLEKIWSLYAHIKRVPDIDFKIVLDVDKYLDGELDDWYKKLKLFVNGSVQFRVNYYKGVFDRIGYNELCQKAYDDFHAPVVITPSFLTDRNARGKVEQHLANFRKDMLEQKIDDKWKEYYTFFDAKFNGYGCQNYSFYNGKLYVNPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRDLNSCVTIKEYMYATD* |
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