NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101666_1004874

Scaffold Ga0101666_1004874


Overview

Basic Information
Taxon OID3300007113 Open in IMG/M
Scaffold IDGa0101666_1004874 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'bubble' site, Water-is
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)2046
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep Seawater → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.8241Long. (o)150.825833Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y
F027536Metagenome194Y
F029123Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0101666_10048743F006217AGGAGGMLEVLLAIAATQPDDNAITKYCMSKFEHWTDRAACGQQLRQIERELEVEALRKFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYGTSKERRC*
Ga0101666_10048744F029123AGGAGMSYEVWFGQNGKWFGYHSFKYKMDAQRYEERYQTVFPNLTVEIREREHASV*
Ga0101666_10048745F027536GGAGMRVYNYKVTPIDRVINDCKRRADDAWWDGNDDEARLHEQEAKLHEEDRDERGYQWVPNF*
Ga0101666_10048746F015102GGAMQEESNDTQDTNAPFDDVTHWVGNLPSKDTHSTERPVKRYSWWQTKSNILRSKLGVETKRED*
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