NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102685_122089

Scaffold Ga0102685_122089


Overview

Basic Information
Taxon OID3300007124 Open in IMG/M
Scaffold IDGa0102685_122089 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 159268001
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1141
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085820Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0102685_1220891F085820AGGTGGMYEKTTFLLLLSENDYLCVVLIRNCSNFICALMRSTFYLFAMLFLATTFFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVYADGEEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNRCHFHRTWLTQGVKGIRVLRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKEL

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