Scaffold Ga0101673_1030326

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101673_1030326

Scaffold Ga0101673_1030326

Overview

Basic Information
Taxon OID	3300007137 Open in IMG/M
Scaffold ID	Ga0101673_1030326 Open in IMG/M
Source Dataset Name	Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dc
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	856
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Dobu 'control' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.752083	Long. (^o)	150.854133	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015026	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101673_10303262	F015026	AGGAG	MAKTIDEKLLQKERDNLVIDLANARGAVENAKNRVQAIQGAIQMTDRLIAVSKEGNYSRSRANSDGVPEEKAPEVQKSLEEHAKDYVSQLGDDDRGQVEP*

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