Scaffold Ga0101670_1014171

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101670_1014171

Scaffold Ga0101670_1014171

Overview

Basic Information
Taxon OID	3300007144 Open in IMG/M
Scaffold ID	Ga0101670_1014171 Open in IMG/M
Source Dataset Name	Seawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', waterEBic1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	1217
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location Name	Upa-Upasina 'control' site, Papua New Guinea
Coordinates	Lat. (^o)	-9.828217	Long. (^o)	150.820517	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058169	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101670_10141713	F058169	AGGAG	MAVYTAAELNASETLGTTEAEIFTNSNKIIIKQILLANYTATDRTAQIKVVPNGGSTGDEHIIFGDITVQANTTQVIDLAMVIPASASVAAKCSAATSVNIHVSGVEVT*

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