NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101670_1083476

Scaffold Ga0101670_1083476


Overview

Basic Information
Taxon OID3300007144 Open in IMG/M
Scaffold IDGa0101670_1083476 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', waterEBic1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)523
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seep → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameUpa-Upasina 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.828217Long. (o)150.820517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009691Metagenome / Metatranscriptome314Y
F034959Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0101670_10834761F009691N/AYVTFARRFVKETVETMDIEELRSLVTNQIHEEIQEGENEYGQSGAFDEMIAWNEDVFLSVAEDFDLEFEGVE*
Ga0101670_10834762F034959GGAGMQIDLNKEQLELLKYAVLWYECNDEEEERVCGELEEKLYNAQENDLLRTFTTMGGLN*

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