NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101672_1061916

Scaffold Ga0101672_1061916


Overview

Basic Information
Taxon OID3300007152 Open in IMG/M
Scaffold IDGa0101672_1061916 Open in IMG/M
Source Dataset NameSeawater microbiome, Papua New Guinea CO2 seep, Dobu 'bubble', waterEBds3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of New South Wales
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Source Dataset Sampling Location
Location NameDobu 'bubble' site, Papua New Guinea
CoordinatesLat. (o)-9.73665Long. (o)150.867667Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020526Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0101672_10619163F020526AGGMTDDDRVTMIEDQCEHIIALCETYVEGDRLEDVGNIRALYEEYGEWLDTFNGMPQAPEEYTTAWCPNMMECDQ*

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