NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079300_10013044

Scaffold Ga0079300_10013044


Overview

Basic Information
Taxon OID3300007162 Open in IMG/M
Scaffold IDGa0079300_10013044 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3090
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F007747Metagenome / Metatranscriptome345Y
F022371Metagenome / Metatranscriptome214Y
F082339Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0079300_100130441F082339N/AYEIEQGEAGQFNDMPDWLQEKIRASKEFATAAGKSTATKVEVDADGNQVPF*
Ga0079300_100130446F007747GGAMKIGTIKFGKSRPAPKAVLVDVSYDKETEATLFKIGLDLLKKDKEAVIEYVIQKSLAYQLKK*
Ga0079300_100130447F003304N/AMKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTRLSNQIKADEAKLVELGR*
Ga0079300_100130449F022371AGGAMFCLLDMAGVVWVVCWFVLYSWITLSAIFCALFIILKLIEYIRKELDL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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