NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079300_10027924

Scaffold Ga0079300_10027924


Overview

Basic Information
Taxon OID3300007162 Open in IMG/M
Scaffold IDGa0079300_10027924 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1950
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → unclassified Pelagibacteraceae → Pelagibacteraceae bacterium TMED287(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049670Metagenome / Metatranscriptome146N
F067731Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0079300_100279241F049670N/AMKNIRIIKENIDVSGILKQLEQYPEDWGNVGRMKGTDRQDPHTKLVRSGVLQLVMGGISKPGEFIGDTEICVPTEAASRHTEIQKVLVQELGFKKLNRCAFLRT
Ga0079300_100279243F067731N/AMSELKRLMKFRENITHFTKQEPKKDIIEQILKDAHELIPVKNNMWNYYIDVWGPEHHEEKKLVALQTVTGENKRNFAPGGKHDGDIKLLEEIYDDWKKKRELFRQGVNLDSNFKGYGFNDQVTAPYLLVYYQKPGYPTEKQKQLGYKEKLIAYSDVTENQWQISAAMHGYGTTLLCAEQGLYASFCKCYYFNYKNFNNILTPLKLGFSNMAFLLGIGYRDIELPYFKNTKKPELNEIVTWK*
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