NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079300_10074683

Scaffold Ga0079300_10074683


Overview

Basic Information
Taxon OID3300007162 Open in IMG/M
Scaffold IDGa0079300_10074683 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series HT 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1015
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001781Metagenome / Metatranscriptome635Y
F023347Metagenome / Metatranscriptome210Y
F024786Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0079300_100746831F023347N/AIAERDLSSALEQELLSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDEA*
Ga0079300_100746832F001781GGAGMKPEDKDKLNKCLEILDTTDLGLSMVWLWTWSTINNILDDETFKAKVTQDQMWDNLCEAVEAGHGFSLEYGAEQHQEDVLEWMLNRDYIVDPDMEEEEEDADE*
Ga0079300_100746835F024786GGAGLPVYRVFGTKYHNYYTIIEAADQFEAVDLANALPETEWNSIPTDDVIEATDVYLNEDTSEELQLN
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