NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0099835_100144

Scaffold Ga0099835_100144


Overview

Basic Information
Taxon OID3300007166 Open in IMG/M
Scaffold IDGa0099835_100144 Open in IMG/M
Source Dataset NameIron oxide microbial mat communities from Yellowstone National Park, Wyoming, USA - BED_top_diel_T=1 metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1721
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park, Wyoming
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045200Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0099835_1001441F045200N/AQGYITEEIGKVTPNQPEVVTLLSPIRDAQYLKLLQNPTTTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPAGTTNEKPLFSVFYARVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTSAGYTPSSPGVISVPGNTGYIPNYGYVGYPNSPSPITFNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSAPPPNDKPYFLGGLKFDSTVEQTIGNALSDAWLNTLQMQSAPQFAISFDWYKLGGFMGYTPSHGFLPAIYIGNSLYMSFYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITNYGYNFIAFGEERLPENLESCPSSYGSYSYYCIPILGFAGQLDGFDPGLNIDKFGSIVPGESFGIHGTYIIPITLPPRPDYGGISSIRMKMLYLAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYMDKSDISPKGKTLVTVPPLIFGQTSAGGNYYVIAGANGANYIYQGVVAHTFGKKYA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.