NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0102976_1180862

Scaffold Ga0102976_1180862


Overview

Basic Information
Taxon OID3300007169 Open in IMG/M
Scaffold IDGa0102976_1180862 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1996
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031872Metagenome / Metatranscriptome181N
F033435Metagenome / Metatranscriptome177N
F097357Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0102976_11808622F031872AGGAGMVESLVVDEWIYDTLSGDSTLQGLLAVDNRAPNYQQGIYLYLAPEKDPVSLRQPQVPYIVVRHTDAGQTDEKSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNKQTVNTTTPVFFLNRSSVSSSVDVSQDGRVDNGIVQLYIATITP*
Ga0102976_11808624F033435AGGAMTSIFDAIPKTEGRPNHVVDIERFIGAPGSFTFREPKAADLFPRPEVQKALKIGFPEFPDQMLQILMIMARCYVIQPGDGEINPPRRFAQLARDRSDIYLYVVGEFAKAFPIDIEAAVDEVPND*
Ga0102976_11808625F097357AGGVAQKILYCSVRHLKRHPSETDLSLDQFAEVAWTGEVWENQIVEIVKAVMSVLAKRTF*
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