Basic Information | |
---|---|
Taxon OID | 3300007169 Open in IMG/M |
Scaffold ID | Ga0102976_1180862 Open in IMG/M |
Source Dataset Name | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | The Singapore Centre on Environmental Life Sciences Engineering |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1996 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Singapore | |||||||
Coordinates | Lat. (o) | 1.286816 | Long. (o) | 103.867024 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F031872 | Metagenome / Metatranscriptome | 181 | N |
F033435 | Metagenome / Metatranscriptome | 177 | N |
F097357 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0102976_11808622 | F031872 | AGGAG | MVESLVVDEWIYDTLSGDSTLQGLLAVDNRAPNYQQGIYLYLAPEKDPVSLRQPQVPYIVVRHTDAGQTDEKSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNKQTVNTTTPVFFLNRSSVSSSVDVSQDGRVDNGIVQLYIATITP* |
Ga0102976_11808624 | F033435 | AGGA | MTSIFDAIPKTEGRPNHVVDIERFIGAPGSFTFREPKAADLFPRPEVQKALKIGFPEFPDQMLQILMIMARCYVIQPGDGEINPPRRFAQLARDRSDIYLYVVGEFAKAFPIDIEAAVDEVPND* |
Ga0102976_11808625 | F097357 | AGG | VAQKILYCSVRHLKRHPSETDLSLDQFAEVAWTGEVWENQIVEIVKAVMSVLAKRTF* |
⦗Top⦘ |