NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0102978_1074229

Scaffold Ga0102978_1074229


Overview

Basic Information
Taxon OID3300007177 Open in IMG/M
Scaffold IDGa0102978_1074229 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Surface and Bottom layers) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4157
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freshwater Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032248Metagenome180Y
F059903Metagenome133Y
F065462Metagenome127Y
F067664Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0102978_107422912F065462N/AMENKVSKTTTVTLVNISDVYDHLGLTDDEVDFIADNAWTGVSYGDAMFTLVGNVYALDRMVEAYEDYHLTVIVNKSMTRDDFANKFWEIVGEADYINLEF*
Ga0102978_10742294F059903GAGGMKQNLVDIVKLIGTPETERGWYVVEGPQGRYHVSALGGRAAKGLQPGTVLKLYRNVGKQMSAYVLSR*
Ga0102978_10742295F032248AGGAGGMRLCFKCKCVIPMERLDVLPDTQTCVQCSGVEKYVGAMVFDHKTAGRLEYVNPKNKQAVETLKRFVNRARN*
Ga0102978_10742297F067664N/AMTKINYEFLDEMYDNAPTRETIRKSTNPVGSLTDNRRKVKPNRDGAHKRAHLQEWER*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.