NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0099773_1139051

Scaffold Ga0099773_1139051


Overview

Basic Information
Taxon OID3300007185 Open in IMG/M
Scaffold IDGa0099773_1139051 Open in IMG/M
Source Dataset NameActive sludge microbial communities from Klosterneuburg, Austria - Klosterneuburg WWTP active sludge MT KNB_T0_4L (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Active Sludge And Wastewater Microbial Communities From Klosterneuburg, Austria

Source Dataset Sampling Location
Location NameAustria: Klosterneuburg
CoordinatesLat. (o)48.3Long. (o)16.2Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052619Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0099773_11390511F052619N/AVENLYDINCDGINPSLVASFFSLSQLPASSDFTNLFDMYRITKIEIEWLPEYTELTDAALVSNAVNVRFNSTIDLTDSLAPAAVSDLLQYQQVLTTGITKPHKRTFVSCFLMGGLVPCQCWLPTSSPAERHYGIKTGIDPTGVAMRFRSRVKMWVECANVN*

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