NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103270_103974

Scaffold Ga0103270_103974


Overview

Basic Information
Taxon OID3300007196 Open in IMG/M
Scaffold IDGa0103270_103974 Open in IMG/M
Source Dataset NameHuman saliva microbial communities from NIH, USA - visit 1, subject 763961826
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4427
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Saliva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068942Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0103270_1039741F068942N/AMIRKILSLPTLALCFTLGSAFFAGCNEDYIKNTETKVRWSNVKNPKYGDYINITLKAEGETFTTVGDHSRISFSGSVSTLDTFTRHDFSESDKDTAYYKDIVIYLTRNKSKGTATLKLVAPPNRTQQPKQFDFSIEVTPPAMYIF
Ga0103270_1039743F068942N/AMIRKILSLPTLALCFTLCTALFAGCGENNDGFVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGNHSWISFSGSVSTLDTFTRHRFSEVDKDTAYYKDIIIYMTRNERERTTTLKLVAPPNRTQQPKQFDFSIEVTPPAMYIFKVRQPALPAKAQ*
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