 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007202 Open in IMG/M |
| Scaffold ID | Ga0103274_1201635 Open in IMG/M |
| Source Dataset Name | Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | National University of Singapore, Singapore-MIT Alliance for Research and Technology, The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2675 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Singapore | |||||||
| Coordinates | Lat. (o) | 1.286816 | Long. (o) | 103.867024 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F005054 | Metagenome / Metatranscriptome | 413 | Y |
| F033712 | Metagenome / Metatranscriptome | 176 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0103274_12016351 | F033712 | AGGTGG | MFDLIDSVLSMQLDVYRQTEIQDPDTGAIKREWNYHRTLDCHAKGVISNSATTRSSDKQVFSNKYMNDQIIQVRTSEKLTM |
| Ga0103274_12016352 | F005054 | N/A | MAEILLKSQSPITHQVYWNGDVGTPNALPTVKIYDVTSDPAITPPLSPTTVLETVTSIADENNPGSYIAYIPFQYTDRNRTLRLRWEYYIGEKYISREDEVYVVTPYVDFNHVQDLGFSIDSSDPGYKSYKELILAERYARKQIEQYTGQKFYLYDDVYSIYGYDSDTLPLPAKIQDLHELYANDILLLDNIHSINNWNYDVEITTTGYGIRVNRANLLDNTVYTANGMVPPSINDGSGIFKSGVQYKIQGRFGWEKVPDDVELAGVELMKDYFSKDKTWRNKYIKNISTFDWDFEYTSEAYAGTGNAYADRLLADYVMVSKVEII* |
| Ga0103274_12016353 | F001106 | AGGAG | MSFETLKIAELKKIAEDFGVEIDGLKNKTDIIAALSEEGVTWSVYEKTIQKLEEEEDMATEVLAKPEVKKVNPEDTVLVKMDRQNYSYETHGFTFTKEHPFVAMDKDTAQDIFDKEEGFRLATPKEVQEFYH* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |