NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103274_1212796

Scaffold Ga0103274_1212796


Overview

Basic Information
Taxon OID3300007202 Open in IMG/M
Scaffold IDGa0103274_1212796 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Monthly Sampling-Site C) 9 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNational University of Singapore, Singapore-MIT Alliance for Research and Technology, The Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2954
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Marina Bay Freashwater Reservoir, Singapore (Monthly Sampling)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.286816Long. (o)103.867024Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004255Metagenome / Metatranscriptome446Y
F010681Metagenome / Metatranscriptome300Y
F070027Metagenome / Metatranscriptome123Y
F078408Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0103274_121279610F004255N/AMNEKSKIYYNVWCCAYQRRGIYRGTDREHREHETVRMCLDMKDVKFYQFDTEKPHYLR*
Ga0103274_12127963F010681N/AMKIRLTPKQQMWANVFRCAVERSNIYFKENDLDRHAREHTTVVLALQKGEQFWKEIL*
Ga0103274_12127964F078408AGGAMSLRTFTDKNGNVWEWNETPEVLAALKSFHAGDYQGPLYAPHPDLKNENKTDS*
Ga0103274_12127966F070027GGAMTSKINLILALQQVENISNLVRENNYEEFFTSHLLPIKFEIERQLNLLNYGKEIV*
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