NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103961_1042331

Scaffold Ga0103961_1042331


Overview

Basic Information
Taxon OID3300007216 Open in IMG/M
Scaffold IDGa0103961_1042331 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12347
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (37.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025679Metagenome / Metatranscriptome200Y
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F036564Metagenome / Metatranscriptome169N
F066486Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0103961_104233120F066486GAGGMKKNTKKLSKNDPYYLKVGKFIKKAHYDLKVDMGDTIKDYFLNFGKQTITDDQYINIGFNNALLKGLNTIKISKKK*
Ga0103961_104233123F025679N/AMTKTFKIGEYAVGGKIRVSIPKTLTNIKIDILDYNDNTLVNQYIYYSFDRIRIERDLFEMTSSYWISQITDWITKNWKTEIYHKTPWYNV*
Ga0103961_10423314F027756N/AMKLEDLVDRKILYLNYPINKYSIQEGKVSEISPAKKCIKINSDWHLIDNIRIIELFKENERPKLGFGLPKNEKDAK*
Ga0103961_10423315F032548N/AMKKAIQLLEELVYQADEDCPAECRTRHFEDILFEASEFVKEYKNQQ*
Ga0103961_10423316F036564AGGAGMKLGRVTLNLDYVVDMDNDQMVKQAIECFYEDLMAGYKYDNIMNWIDVVEDENATEDMIPEFLLEKENE*
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