NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103961_1208109

Scaffold Ga0103961_1208109


Overview

Basic Information
Taxon OID3300007216 Open in IMG/M
Scaffold IDGa0103961_1208109 Open in IMG/M
Source Dataset NameCombined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe Singapore Centre on Environmental Life Sciences Engineering, Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3149
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Cyanobacterial Bloom In Punggol Reservoir, Singapore (Diel Cycle)

Source Dataset Sampling Location
Location NameSingapore
CoordinatesLat. (o)1.409238Long. (o)103.907928Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002827Metagenome / Metatranscriptome527Y
F005146Metagenome / Metatranscriptome410Y
F042880Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0103961_120810911F002827GGAGMNKEYYQAKADLCRDLFIKQVGEGDSKEAGANLIRMVNALNQINLINYKEEKEGNA*
Ga0103961_120810914F005146AGGAGGMKPVNFYEVQDRKGEVAWGGASATEAVEWFRRGLDNSIYVSVWDEEDIEEPKLVIDKIDITKLVLTTIVSERGRA*
Ga0103961_12081097F042880GAGMANYTTVGELIEHLKGEDSNAPIIYQYYLAEHFEISEEVFGQVAREFDSLIPCSDSYEVISGEINNKREEANG*
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