NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075025_1052747

Scaffold Ga0075025_1052747


Overview

Basic Information
Taxon OID3300007219 Open in IMG/M
Scaffold IDGa0075025_1052747 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaT_SC_2013 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)574
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)41.5935Long. (o)-78.5142Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006257Metagenome / Metatranscriptome377Y

Sequences

Protein IDFamilyRBSSequence
Ga0075025_10527471F006257N/AMHGTEHCVKERWVFRRSAPPRSISLPQDQCFPALRSFSLQWSRSLATAFPSPATAAPSQRPPFRGQRSRPATSRPTNWLLRPVRPQLPRLHLVCPSASSFFASGPLRFRSLARLAASSVSTPLRDFCLPRDRSVQPIPPPFGSPSESARFPLAPRSRFYF*
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