Scaffold Ga0075463_10077891

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075463_10077891

Scaffold Ga0075463_10077891

Overview

Basic Information
Taxon OID	3300007236 Open in IMG/M
Scaffold ID	Ga0075463_10077891 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1069
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008240	Metagenome	336	Y
F046083	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075463_100778911	F008240	GGAG	VTATVVQSGDYTLEIDTGAPVQGFRLDDTVRGVLDGTTFVLDGLTDFADVTDGVKGIRIKRGRRDIKDQFSAGTMTFVLDDTAAGGVFNPFATDSPYYDPDNVKPGLAPMRLVRLYREAELLFVGRIVDYDYNFGLNGDDTVSVTCADDFYLLAQTVTETTSLSKQFSGARISAVLDLTEVDYPTGSARSIATGTVEIGGGGDYNLELG
Ga0075463_100778912	F046083	N/A	NVRELQQAERDLTRAIIETLSAHGLLTLAFDKQLKIKIDTGDLDAAYASALRVLNAFQQVQQVSAGQRPSTYVPPRDELGFLSAPPVATTTITPISSITRAPSGAIQNVTVNVSTINPTQEVGEAVVTAIRNYNRTSGSAQIGVSRL*

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