NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075171_1457180

Scaffold Ga0075171_1457180


Overview

Basic Information
Taxon OID3300007239 Open in IMG/M
Scaffold IDGa0075171_1457180 Open in IMG/M
Source Dataset NameWastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B2 RNA (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)772
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location NameMilwaukee, Wisconsin, USA
CoordinatesLat. (o)43.023Long. (o)-87.895Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033437Metagenome / Metatranscriptome177Y
F059886Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0075171_14571801F059886GAGGVIYASRAASAILRGGRHQLSPTIPRSPGIIPAVLSVAPFRPLRFDCS
Ga0075171_14571802F033437N/AALAFAGGVLPDATLRGMRMSRSHGGTVLTVAGRDLSSEASAPGSDAPCREHRAGRGADTPATNISRVGTLTTGTAPACDRPLAPRYGSDLLPLRLHFAFAAG*

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