NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075172_1432591

Scaffold Ga0075172_1432591


Overview

Basic Information
Taxon OID3300007242 Open in IMG/M
Scaffold IDGa0075172_1432591 Open in IMG/M
Source Dataset NameWastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 C RNA (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)635
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Amoebozoa incertae sedis → Stereomyxa → Stereomyxa ramosa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent → Wastewater Effluent Complex Algal Communities From Wisconsin, To Seasonally Profile Nutrient Transformation And Carbon Sequestration

Source Dataset Sampling Location
Location NameMilwaukee, Wisconsin, USA
CoordinatesLat. (o)43.023Long. (o)-87.895Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005444Metagenome / Metatranscriptome400Y

Sequences

Protein IDFamilyRBSSequence
Ga0075172_14325911F005444N/AVVIALLLCLAVCALAQIPLKPIWPNGWSSTVRVHRSEEDFPSFFRWFYDRSLNKDRIDGLVKWKDEFYFAERIWDHSAGKQYDIFYQGGEVNCFDRAINGSLPKPDFSRLTYVGKALVNYEPAYHWIYEDKLRGFLFAVYDRQDNRQILRIDVDDHIRHKAESWIFLEYNVGPQGEELFTIEKIILDQCNDF*
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