Basic Information | |
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Taxon OID | 3300007255 Open in IMG/M |
Scaffold ID | Ga0099791_10001593 Open in IMG/M |
Source Dataset Name | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8991 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Eel River Critical Zone Observatory, California, USA | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021259 | Metagenome / Metatranscriptome | 219 | Y |
F023285 | Metagenome | 210 | Y |
F026234 | Metagenome | 198 | Y |
F039971 | Metagenome | 162 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099791_1000159310 | F039971 | GGAG | MRIVAWLLVAAGLVVTGIGVAAALGQAGSGAQPWGNELSDNFVFSKALPFVLGFGVAVGLVMASTYGAKTRSDGAVRRWSPGTVFGHWVLTLGFVLALPTGMWQYLGGILDVNLPIPLYLFYRVHYIGAGIVLFAVAAFVSYLWMTGDRSLLIRRGEWSRHLLGLAYELPRSVRGPYAKLLRIDLSRPRPPMGKFTFYEKVVELPSWSILLALITVTGLIKAGRYLIPVPGFVLWLASTLHVAAMVAIVIKLLDHLRYTFPRWSLMGAITTTWMKEQAPARRQGASEPSGSSATGIAGGGDT* |
Ga0099791_100015934 | F026234 | N/A | VADGSHSALSGQTSGGESPLLVSTIVCAYTQAELPTPWLAIFHRFERTMHKAGLRIRVRLFPLEELPGAFEVLVVPPELQAAAQALQTGARIIVTSRAEAPAAADLLLREIERGETLYAEKVRPGEPKIMTHRGGDIL* |
Ga0099791_100015935 | F023285 | GGCGG | VSQDLLARLRRVEQQIRAFKQLHESELQLILDELTDIANQVDEPSAAEKPRAARADDADPAASSPKRAKWLAEQEKKAGPKSRRELLFGEREEK* |
Ga0099791_100015939 | F021259 | GGGGG | MRRLVALLGLVWSLANLGVAYFFLTGAFVAKTAAKEGILAQLSLLLGGVLIAGFAILLARECVRLLTSADASETA* |
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