Basic Information | |
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Taxon OID | 3300007258 Open in IMG/M |
Scaffold ID | Ga0099793_10004736 Open in IMG/M |
Source Dataset Name | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4861 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Eel River Critical Zone Observatory, California, USA | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000300 | Metagenome / Metatranscriptome | 1340 | Y |
F001036 | Metagenome / Metatranscriptome | 796 | Y |
F017355 | Metagenome / Metatranscriptome | 241 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099793_100047363 | F000300 | AGGAG | MVNKLFTLLFASVLVFGLSTAVFAQEAPHTAKKAKAAKPARWEGIVTRVSTDKSTLTVREVGSSHEKTVQYDSSTKWVSQEHGSKKVNDIDSSQVKEGDRVITEGTWDKDGALHATLVSKRLTKL* |
Ga0099793_100047366 | F017355 | AGG | VKVKEEVNMVRKLFTLLFASVLVFGLSAPVFAQESSKPAEGKDVKQDRVEGVVTRSNKDKSTLVVRNRDTNVEKTVQYDSSTQWTSQEHHSKTVNNIDASQVKDDDRVICLGSFDKDGILHATTISKRLTR* |
Ga0099793_100047367 | F001036 | N/A | MQMKVRLTLLSLVFAGLVFAAMPAGATQEAAEKKDAPAAQKETQWQGNVIRVNKDKSTLEIHGGAAPSSDLRQVAYDSSTHWTKQGKPGQQDDVKEGSFVILLGHVDDSGVLHATRIDLRRPR* |
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