Basic Information | |
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Taxon OID | 3300007265 Open in IMG/M |
Scaffold ID | Ga0099794_10005256 Open in IMG/M |
Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5180 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000624 | Metagenome / Metatranscriptome | 977 | Y |
F000885 | Metagenome / Metatranscriptome | 849 | Y |
F002750 | Metagenome / Metatranscriptome | 533 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0099794_100052561 | F000885 | N/A | YAAARPRLNQRGGKRRRGVQMANTKLNFIGEVTQIAGVAAVVAGVVLSLHHWPAAVALIGGGAAFYVGRKLRAQ* |
Ga0099794_100052564 | F002750 | N/A | MLERFRTLLRSRYVGLLEGEVFRLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQIQAWRGNAAARSTETTTSPGQ* |
Ga0099794_100052566 | F000624 | AGGA | MLTHWYGILTALFAASVQFVLFLRWLHRRMRNDEITRAFVRDIATNHLPHIYNALQKIAAEQGIELDETPLVRFVDLNGHRRAR* |
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