Scaffold Ga0101448_107348

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0101448_107348

Scaffold Ga0101448_107348

Overview

Basic Information
Taxon OID	3300007273 Open in IMG/M
Scaffold ID	Ga0101448_107348 Open in IMG/M
Source Dataset Name	Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ14 time point
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Australian Centre for Ecogenomics
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8167
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (61.54%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → Puniceispirillum phage HMO-2011	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location Name	Port Hacking, Australia
Coordinates	Lat. (^o)	-34.1192	Long. (^o)	151.2267	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021014	Metagenome	221	Y
F040605	Metagenome / Metatranscriptome	161	Y
F073277	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101448_10734810	F021014	AGGAG	MGYEVKDGDVAIIISPDVEDGEWTGVLKTGLIFGESKYPEAMRNAMDYALTMAATTAVLEDYPELMDYFDDARHTILKEMFPKQYAESELELNKDMEYTKEGNVIKLTKWTKTLGEA*
Ga0101448_10734812	F040605	N/A	MEVDEDNNFLSAHEEGHTEDVHDLVSNVMHDVDDIRIYNLLVKERE*
Ga0101448_1073483	F073277	AGGAG	MKLAVTIDVDGDIMYVPEGAVFENFPKPKLFDNMEDAEEERAKWNTGVIVNYETGRSVQQIRSFTDAERARAEERARINRDDGTSTDQDTTQ*

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