NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101452_102052

Scaffold Ga0101452_102052


Overview

Basic Information
Taxon OID3300007280 Open in IMG/M
Scaffold IDGa0101452_102052 Open in IMG/M
Source Dataset NameMarine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Centre for Ecogenomics
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11520
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (45.83%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location
Location NamePort Hacking, Australia
CoordinatesLat. (o)-34.1192Long. (o)151.2267Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025258Metagenome / Metatranscriptome202Y
F102786Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0101452_10205222F025258GAGMNLENKYENHSNRKLSNQSSHFWLSVYIYMSEYKPKPFTKEIAEQMREEMNLPFDEKRTLCNVLKQAYRCSKEESYNLEAVRALLLESLWMGQRMHTKLYDDQQQQFKSEYIEQDKDEDPFSVDWSNLDGRNVAQGNWD*
Ga0101452_10205224F102786N/AIKNIMLKGKERQIVLDCLYQESLTEAKKHTIFEVKAKMTAKLEAQLRYEHLSPRERIQIYSNFICKKITKYIADDISKSATMYWVNGTPEKRNQRIAEYARYAFTRMPENQKIAICEKLRFKYLSN*
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Institute for Fundamental Biomedical Research
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