NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066366_10082885

Scaffold Ga0066366_10082885


Overview

Basic Information
Taxon OID3300007283 Open in IMG/M
Scaffold IDGa0066366_10082885 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_250_ad_252m_LV_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1207
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)-0.015038Long. (o)-22.962334Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019554Metagenome / Metatranscriptome229N
F094416Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0066366_100828852F019554GAGGMSLDRLKEINLFEGKTLDEIFKVIYSQSIEEREEAINTFKKFKEMVEDKEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLELESESQDSVNANDILDLLDKEGIAPKRFMPKDDEESKSEHEPSIVEFPKLNDKKKA*
Ga0066366_100828853F094416N/AMFEALSAIFIILTVGLGIALYRSINRLSFYEDIYGDMYGRLRDLSDNIKGVMSREIYSDDPVIRSFIGQLQEIDYYLQQVDENYRFNTLGEDVDESG*
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