NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066367_1023902

Scaffold Ga0066367_1023902


Overview

Basic Information
Taxon OID3300007291 Open in IMG/M
Scaffold IDGa0066367_1023902 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2067
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)-0.015038Long. (o)-22.962334Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000615Metagenome / Metatranscriptome984Y
F059074Metagenome134N
F068113Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0066367_10239024F000615N/AVSGSERPENIMCRIRTFYECSDGTMGWAEIVLSYDEDIAGHIRHWSTGGRMVITEHIDLV
Ga0066367_10239026F059074GGAGMEIDLSLNRSLEELTSSYFEAYEAGFGCDSFLAVNVNSTAADVSDYYVLENYLSDYGAI*
Ga0066367_10239027F068113GGAMRNEIEKVLEAMREDYKRWSYWSSSYKPNAHSDKKIMNEMIENYCNGLEVTEGSRYWKITSTNGSGTSRSV
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