NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104940_1002105

Scaffold Ga0104940_1002105


Overview

Basic Information
Taxon OID3300007320 Open in IMG/M
Scaffold IDGa0104940_1002105 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10805
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F051214Metagenome144N
F071329Metagenome122N
F074985Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0104940_100210513F051214AGGAGMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIIHDKIDLKNEWIA*
Ga0104940_100210514F071329N/AMRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSIGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0104940_100210516F018385GGAMMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0104940_10021057F074985AGGAGGVELTDGGWYNTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMNKIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0104940_10021059F027205AGGAVASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*

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