Scaffold Ga0075016_1023783

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0075016_1023783

Scaffold Ga0075016_1023783

Overview

Basic Information
Taxon OID	3300007327 Open in IMG/M
Scaffold ID	Ga0075016_1023783 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1704
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking

Source Dataset Sampling Location
Location Name	Pennsylvania, USA
Coordinates	Lat. (^o)	41.1752	Long. (^o)	-78.4168	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005443	Metagenome / Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075016_10237832	F005443	N/A	MLSNTLNTNEVKNSAGTGIGFQSLSIDQRSRIFAQITEAPYLPHRLSISHTESGAGLKARRRSVVRIDKTILSTVDTATPVTASAYIVMDIPVGAITTTAEAANCLAELLSFCATTGAASTVLFDGTGNGGQVLLTGGL*

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