Basic Information | |
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Taxon OID | 3300007327 Open in IMG/M |
Scaffold ID | Ga0075016_1070822 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaT_ABR_2013 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 582 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds → Freshwater And Sediment Microbial Communities From Various Areas In North America, Analyzing Microbe Dynamics In Response To Fracking |
Source Dataset Sampling Location | ||||||||
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Location Name | Pennsylvania, USA | |||||||
Coordinates | Lat. (o) | 41.1752 | Long. (o) | -78.4168 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F008133 | Metagenome / Metatranscriptome | 338 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075016_10708221 | F008133 | N/A | FQVIRFPARSPPACTALSFAIKSAGRFACRLPYERFLRPQDQCFQTRRLLPLSRNRVARNGLSLARNGCRLSTTSIPGSTFRTCYFAPFQTGFRTRSAFRLRYRVPVRPGHGRFIASGPLHFHHPVRPAAPTASTPPRDFCLPRDQSVQRRLLPAGPPGESARSPFAPRCPVFFKWASDHRSRSATFPLACCS |
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