NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070745_1189489

Scaffold Ga0070745_1189489


Overview

Basic Information
Taxon OID3300007344 Open in IMG/M
Scaffold IDGa0070745_1189489 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)764
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058199Metagenome / Metatranscriptome135N
F090483Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0070745_11894891F090483N/AMDGMLKFRYQQHKEFEMHEELKPLENAVIDCFMVPKEWLPKPYQGKRSHRSLRSVVKQARKRGAIETEHAELKRIKDEKIAKYSAEFEEKGSFTYEENADKLYRNQMTFCTLMGVELDED
Ga0070745_11894892F058199N/APLFFHFLSLRFTMFKLTLITVEACVDGYHNDTEITFGKSPKECWAKMRGPNHGQRINRGGCPLGLGGTPVLCCERLEKNGKVIKEVWD*
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Institute for Fundamental Biomedical Research
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