NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070752_1018412

Scaffold Ga0070752_1018412


Overview

Basic Information
Taxon OID3300007345 Open in IMG/M
Scaffold IDGa0070752_1018412 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3582
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002733Metagenome / Metatranscriptome534Y
F035125Metagenome / Metatranscriptome173N

Sequences

Protein IDFamilyRBSSequence
Ga0070752_101841214F002733AGGAGMAKDNKLWIQLTPTEANALMVLLDGEMESRFRYEGLDLKEWETLDLEANKIWAYHKYKTW
Ga0070752_10184129F035125AGGAGMKTAKKKITVRFVVEQDFEVEVRDSDLGMGSFYAIGDVMVSSGYDQWDVLTHEFIFDNPVGDMRPVHDGHLFDANLYNLGLHSEYIQPWLFEGQTDKDPYADEEDDEGEMICLSTK*

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