Scaffold Ga0070752_1038878

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0070752_1038878

Scaffold Ga0070752_1038878

Overview

Basic Information
Taxon OID	3300007345 Open in IMG/M
Scaffold ID	Ga0070752_1038878 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2260
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.130153	Long. (^o)	-75.249887	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009006	Metagenome / Metatranscriptome	324	N
F034915	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070752_10388781	F034915	N/A	QLAELLVAVSWSPPHKEFDLNDLNTVVDVIEEQKKQHGKR*
Ga0070752_10388782	F009006	AGAAG	MASVSAKVEINGLNEALRTLRYIDPQLRRKVDKEMKDTVGKDIVPFARRLYPATDRVGNWGRWPRGNGYRQAAVRNGVKVRIKTTGRVDQISGLFLTNSNGPGVIFSTAGNKTEGSAPTRPNGSGNSAAFIQRLKRFGEPTRALWPAVLEKRDTLEANVEEAVDKLMKTISKELR*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.