NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070753_1113671

Scaffold Ga0070753_1113671


Overview

Basic Information
Taxon OID3300007346 Open in IMG/M
Scaffold IDGa0070753_1113671 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1047
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025878Metagenome200N
F047990Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0070753_11136711F047990GGAGVTATVVQSGDYTLEIDTGAPVRGFRLDDTVRGVLDGTTFVLDGLTDFADVTDGAKGIRIKRGRRDIKDQFGAGTMTFLLDDTAAGGVFNPFASDSPYYDPDNVKPGLAPMRLVRLYREAELLFVGRIIDYDYNFG
Ga0070753_11136712F025878N/AEELMQEATEAAGAQLELAKSVNAVYDEVKQLNPELVEMLGLLDVQDDIEKLRAEFDKYNEVIAESSDNVRELQQAERDLTRAIIETLSAHGLLTLAFDKQLKIKIDTGDLDAAYASALRVLNAFQQVQQVSAGQRPSTYVPPRDELGFLSAPPVSTTTITPISSITRAPSGGIQNVTVNVSTINPTQEVGEAVVTAIRNYNRTSGSAQFGVTKL*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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