NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104999_1007727

Scaffold Ga0104999_1007727


Overview

Basic Information
Taxon OID3300007504 Open in IMG/M
Scaffold IDGa0104999_1007727 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8828
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)267
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035492Metagenome172N
F071659Metagenome122Y
F090889Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0104999_10077273F035492N/AMNNRRKQMADVKEILEGGSGEDSWYDPKQDFSGPMPEGEYKAHVKSLSIKRNIVVKSKFLSDIYEVIFTVADENKDMEYHNDNGEVISGSTFVGRDFRSKGFFRFKKPSKRDYPKLSENMGSNRAYMELVNSFGLNMEEVDGKFYLPELDESDIVGTPVIAKVYHETWTDADGEERVTPKAAMLFAWEGGKKQVEELPF*
Ga0104999_10077274F090889N/AMPSPFIFLRGKMSNLKFKELEEYEPILKRVRIEKSEDMTEKDVEDFCDWVCAKATRLGFDVRELNEDKRLD*
Ga0104999_10077275F071659GAGMKIKDWIKIEESMTDLMGWDLGIETMCEAHREVAPKKPIYELSEREDKKIIFRLRKRYSNYRKNKN*
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