Basic Information | |
---|---|
Taxon OID | 3300007504 Open in IMG/M |
Scaffold ID | Ga0104999_1049385 Open in IMG/M |
Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1928 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 267 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F056672 | Metagenome / Metatranscriptome | 137 | N |
F066124 | Metagenome | 127 | N |
F069327 | Metagenome / Metatranscriptome | 124 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104999_10493852 | F069327 | GAGG | MRRWDEREKAFDGDTPEEIIDDFEVAKWEVSSYRYKKEHFLIGLDLISEGKRIDERLDFWESRLEILCRENYKLLKSKGKDVDEIMDFFSEKTKEKLK* |
Ga0104999_10493853 | F066124 | GAGG | MGRWDEYSGTDVELLADFRNLQMQLLHRKDRRKNALGKEEIEKVDSEIKKLYQEMKELYERNHKRFQFSEFMRKTKGFECFAWFLMLSEDTKKRLR* |
Ga0104999_10493855 | F056672 | AGGAG | MKAQEYNLTGNEKFSVWFTTMMMMTNAQLDHDSKARILKMAKIMCVGECLDMQKLENDDPAEMEKSKEKQKELDAMKDAIWKEMDKIQEVLTACYGEPRKGNKHHRCRHND* |
⦗Top⦘ |