NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105011_1000791

Scaffold Ga0105011_1000791


Overview

Basic Information
Taxon OID3300007508 Open in IMG/M
Scaffold IDGa0105011_1000791 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35713
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (58.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F040325Metagenome / Metatranscriptome162Y
F064801Metagenome / Metatranscriptome128Y
F066856Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0105011_100079110F064801N/AMGFVDTIKGVFRLGTANKAYTETTTRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKYKCANCSKEFQYEPAVGDKPDDQPFESNDDAEPFNALPKKKGDIKKQAKQAELQCDTCGSNDLKRPIPEHRSKLEELLNTPVNGNDQNLEDVARQLERDLEIADNAYLLVLKNYYIDDASNRIDPDRTEIKEFLRVDPPQVAMIADSDGRIGYDDKRNPIFVCPKFEHRDRRLSEPVCERCGAEALKAVAEVNSVYSIGIPQPKRVIYGEGELIWKAGKYKPSLIYGYSPIYSIWSKAMSLSHMDEYIRKYFDKMRPPRGLLVIASRNYETFRKSMDVLEQKAQEDPYMIHPLLVESDKGSKNMAQWLDFTGSLKELEFIAIRKELRMIIGAIYGVLPLYYGELPSGWSQEGLQVTITNRAIKWGQDILMKSFFRKIAALLNIDDWELRLKTGEETDHLRDLQIQGVEIQNMQALQAMGFDITRTHTGEFKVSKDTAFNAKDMLQMGAEQKQGRGRGTAAPEEDTQDFEGEPSSRLPTDVGGIGQGHPSSGSGTSLSRKSFPDGINPKNYEIVKNTLQTAVDFGWTKSKTVSELRKNAAMTVRSARELVKNEFDSVRRWEDGKEE*
Ga0105011_100079113F066856N/AMVELEVEDYNELFDWFTLIMGRNPQNITSQAKSTFWKLKFLSDDKIKEEGYDEDEDEST*
Ga0105011_100079153F040325GAGMARRKQSNTHTTICITWEDKEEFRKFAKFVKKTKTGELYESDTVLFHKLLEAYKASNQASDKPNSTYPTKC*
Ga0105011_10007918F001235N/AMATKLNVDDGGLAIGKKLWKTHQDNEYTHVDNYKEAICLNCFKKDAAAATIADICGECAGKRGREPLLVKIADKMYGLCFFCGKHKFGIEQINARFCRGCHRRIANVTKEYNKKGGMFNVDPFWLSMKKKLGKDWKALMSNPSSTRR*

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