Scaffold Ga0105011

Basic Information
Taxon OID	3300007508 Open in IMG/M
Scaffold ID	Ga0105011_1000791 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Genomics Facility

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35713
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (58.93%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35713

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (58.93%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	Depth (m)	237
Location on Map

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Source Dataset Sampling Location

Location Name

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

Depth (m)

237

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F040325	Metagenome / Metatranscriptome	162	Y
F064801	Metagenome / Metatranscriptome	128	Y
F066856	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105011_100079110	F064801	N/A	MGFVDTIKGVFRLGTANKAYTETTTRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKWKYKCANCSKEFQYEPAVGDKPDDQPFESNDDAEPFNALPKKKGDIKKQAKQAELQCDTCGSNDLKRPIPEHRSKLEELLNTPVNGNDQNLEDVARQLERDLEIADNAYLLVLKNYYIDDASNRIDPDRTEIKEFLRVDPPQVAMIADSDGRIGYDDKRNPIFVCPKFEHRDRRLSEPVCERCGAEALKAVAEVNSVYSIGIPQPKRVIYGEGELIWKAGKYKPSLIYGYSPIYSIWSKAMSLSHMDEYIRKYFDKMRPPRGLLVIASRNYETFRKSMDVLEQKAQEDPYMIHPLLVESDKGSKNMAQWLDFTGSLKELEFIAIRKELRMIIGAIYGVLPLYYGELPSGWSQEGLQVTITNRAIKWGQDILMKSFFRKIAALLNIDDWELRLKTGEETDHLRDLQIQGVEIQNMQALQAMGFDITRTHTGEFKVSKDTAFNAKDMLQMGAEQKQGRGRGTAAPEEDTQDFEGEPSSRLPTDVGGIGQGHPSSGSGTSLSRKSFPDGINPKNYEIVKNTLQTAVDFGWTKSKTVSELRKNAAMTVRSARELVKNEFDSVRRWEDGKEE*
Ga0105011_100079113	F066856	N/A	MVELEVEDYNELFDWFTLIMGRNPQNITSQAKSTFWKLKFLSDDKIKEEGYDEDEDEST*
Ga0105011_100079153	F040325	GAG	MARRKQSNTHTTICITWEDKEEFRKFAKFVKKTKTGELYESDTVLFHKLLEAYKASNQASDKPNSTYPTKC*
Ga0105011_10007918	F001235	N/A	MATKLNVDDGGLAIGKKLWKTHQDNEYTHVDNYKEAICLNCFKKDAAAATIADICGECAGKRGREPLLVKIADKMYGLCFFCGKHKFGIEQINARFCRGCHRRIANVTKEYNKKGGMFNVDPFWLSMKKKLGKDWKALMSNPSSTRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105011_1000791

Overview

Ecosystem & Geography

Associated Families

Sequences