NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105012_1001125

Scaffold Ga0105012_1001125


Overview

Basic Information
Taxon OID3300007509 Open in IMG/M
Scaffold IDGa0105012_1001125 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30342
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (65.79%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000107Metagenome / Metatranscriptome2222Y
F001156Metagenome / Metatranscriptome763Y
F022907Metagenome / Metatranscriptome212Y
F076184Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0105012_100112511F000107N/AMENTEVVDTTSKYIVKSTGIGSETNLGKWLVDAEELTGGTDKSKVSLIECYHLIEGTGTLTISTGSEDLTLTGKGKYGLRPGQLKFGNDKQFKLTTDEDVKSYLLVTEFRRN*
Ga0105012_100112513F001156AGAAGMSKRKPKDRSRAILERIVGTKSKATLAEAFKLAFAEKYDIKREEIKQGIVDKVYNKEKVEK*
Ga0105012_100112525F076184N/AMISFLEKLNYVPPVIKPYDKNGVVVYKDKDSRWHLTVDGDQMMLYTVGHEQALHFYSHYKLAFGHVICTGLGFGVREQWLATKPEVTKITVLEKNKAVIDYHKDIGTPWSDKIEIINCDANEYKGSCDFLSIDHYERHSTASIINSIRTTEKNIDCRSSWFWLLERWLDSGCIESNNEDYVYYQPWEKNDLYQAYNKLKTFLDLKSLPELNIKQLTEFVDVYWNRV*
Ga0105012_10011253F022907N/AMDDDNTLDIQQNVGDVGGDFTKTIVVGDDIDFADDGAGAEMGDVEAVIDLTYNIFQYIPELIFVSIYGLIMYSAVLLITRIIKK*

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