Scaffold Ga0105016_1078574

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0105016_1078574

Scaffold Ga0105016_1078574

Overview

Basic Information
Taxon OID	3300007512 Open in IMG/M
Scaffold ID	Ga0105016_1078574 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Bigelow Laboratory Single Cell Genomics Center (SCGC)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2066
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	247
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021317	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_10785741	F021317	N/A	DLISNAPRILNEINKQIAEQKAAGVTDEQLKSLYQKKQMLELVTNNQEIINIVGKPIIKKLLGFVRAI*

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